LungMAP Data Explorer

Bronchpulmonary Dysplasia (BPD)

Updated June 18, 2024

Bronchopulmonary dysplasia (BPD) is a chronic lung disease characterized by alveolar dysplasia in newborns that are typically born prematurely. In this study, single-nucleus RNA-Sequencing was performed on BDPD infants (n=15) and age matched controls (n=8) who died from complications associated with BPD (4 months to 3 years of age). Raw sequencing data are controlled-access and available through the LungMAP dbGAP study using BioData Catalyst and Terra.

Xin SunUCSD
None
Allen Wang (Principal Investigator)1
Xin Sun (Principal Investigator)2
Jamie Verheyden (Experimental Scientist)2
Justin Buchanan (Experimental Scientist)1
Ryan Lancione (Computational Scientist)1
Charlene Miciano (Computational Scientist)3
Henry Jiao (Computational Scientist)1
Jisun Chin (Experimental Scientist)2
1UCSD Center for Epigenomics
2UCSD
3UCSD Center for Epigenommics
Kevin Burns

To reference this project, please use the following link:

https://data-browser.lungmap.net/projects/1977dc47-8414-4263-a870-6b0f207d8ab3
None
None

Downloaded data is governed by the LungMAP Data Release Policy.

Analysis Portals

None

Project Label

Bronchpulmonary Dysplasia (BPD)

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

Lung

Organ Part

middle lobe of right lung

Selected Cell Types

Unspecified

Disease Status (Specimen)

Unspecified

Disease Status (Donor)

2 disease statuses

Development Stage

17 development stages

Library Construction Method

10x 3' v1

Nucleic Acid Source

single cell

Paired End

true

Analysis Protocol

5d20145d-726c-4f13-b632-86d341d8207d, 918479db-882a-4781-9872-64f7a84a4e57

File Format

2 file formats

Cell Count Estimate

Unspecified

Donor Count

23
fastq.gz761 file(s)h542 file(s)