LungMAP Data Explorer

Human pulmonary alveolar microlithiasis (PAM) scRNA-Seq with SLC34A2 (Npt2b) mutations

Updated September 16, 2024

Pulmonary alveolar microlithiasis (PAM) is an autosomal recessive lung disease caused by a deficiency in the pulmonary epithelial Npt2b sodium-phosphate co-transporter that results in accumulation of phosphate and formation of hydroxyapatite microliths in the alveolar space. The single cell transcriptomic analysis of a PAM lung explant showing a robust osteoclast gene signature in alveolar monocytes and the finding that calcium phosphate microliths contain a rich protein and lipid matrix that includes bone resorbing osteoclast enzymes suggested a role for osteoclast-like cells in the defense against microliths.

Francis X McCormackUniversity of Cincinnati College of Medicine

Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis

Francis X McCormack (Principal Investigator)1
Yan Xu (Principal Investigator)2
Shuyang Zhao (Computational Scientist)2
1University of Cincinnati College of Medicine
2Cincinnati Children's Hospital Medical Center
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To reference this project, please use the following link:

https://data-browser.lungmap.net/projects/3a02d15f-9c6a-4ef7-852b-4ddec733b70b
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GEO Series Accessions:

Analysis Portals

None

Project Label

Human pulmonary alveolar microlithiasis (PAM) scRNA-Seq with SLC34A2 (Npt2b) mutations

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

Lung

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

Unspecified

Disease Status (Donor)

2 disease statuses

Development Stage

2 development stages

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

true

Analysis Protocol

8ef59c89-6477-4d8b-a211-4b66d8d95a8c

File Format

2 file formats

Cell Count Estimate

14.0k

Donor Count

2
.h56 file(s)fastq18 file(s)